Schema for foldUtr5
  Database: mm9    Primary Table: foldUtr5    Row Count: 40,325   Data last updated: 2011-03-03
Format description: Info about folding of RNA into secondary structure
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name uc007aeu.1varchar(255) values mRNA accession
seq GCGGCGGCGGGCGAGCGGGCGCUGGAG...longblob   mRNA sequence (U's instead of T's)
fold .(((((((((.(.(((....))).).....longblob   Parenthesis and .'s that describe folding
energy -55.75float range Estimated free energy of folding (negative)

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via foldUtr5.name)
      knownGeneV39.ceBlastTab.query (via foldUtr5.name)
      knownGeneV39.dmBlastTab.query (via foldUtr5.name)
      knownGeneV39.drBlastTab.query (via foldUtr5.name)
      knownGeneV39.foldUtr3.name (via foldUtr5.name)
      knownGeneV39.foldUtr5.name (via foldUtr5.name)
      knownGeneV39.gnfAtlas2Distance.query (via foldUtr5.name)
      knownGeneV39.gnfAtlas2Distance.target (via foldUtr5.name)
      knownGeneV39.kgAlias.kgID (via foldUtr5.name)
      knownGeneV39.kgColor.kgID (via foldUtr5.name)
      knownGeneV39.kgProtAlias.kgID (via foldUtr5.name)
      knownGeneV39.kgSpAlias.kgID (via foldUtr5.name)
      knownGeneV39.kgTargetAli.qName (via foldUtr5.name)
      knownGeneV39.kgXref.kgID (via foldUtr5.name)
      knownGeneV39.knownAttrs.kgID (via foldUtr5.name)
      knownGeneV39.knownBlastTab.query (via foldUtr5.name)
      knownGeneV39.knownBlastTab.target (via foldUtr5.name)
      knownGeneV39.knownCanonical.protein (via foldUtr5.name)
      knownGeneV39.knownCanonical.transcript (via foldUtr5.name)
      knownGeneV39.knownCds.name (via foldUtr5.name)
      knownGeneV39.knownGene.name (via foldUtr5.name)
      knownGeneV39.knownGeneMrna.name (via foldUtr5.name)
      knownGeneV39.knownGenePep.name (via foldUtr5.name)
      knownGeneV39.knownIsoforms.transcript (via foldUtr5.name)
      knownGeneV39.knownToEnsembl.name (via foldUtr5.name)
      knownGeneV39.knownToGnfAtlas2.name (via foldUtr5.name)
      knownGeneV39.knownToHprd.name (via foldUtr5.name)
      knownGeneV39.knownToLocusLink.name (via foldUtr5.name)
      knownGeneV39.knownToMrna.name (via foldUtr5.name)
      knownGeneV39.knownToMrnaSingle.name (via foldUtr5.name)
      knownGeneV39.knownToMupit.name (via foldUtr5.name)
      knownGeneV39.knownToPfam.name (via foldUtr5.name)
      knownGeneV39.knownToRefSeq.name (via foldUtr5.name)
      knownGeneV39.knownToSuper.gene (via foldUtr5.name)
      knownGeneV39.knownToTag.name (via foldUtr5.name)
      knownGeneV39.knownToU133.name (via foldUtr5.name)
      knownGeneV39.knownToU95.name (via foldUtr5.name)
      knownGeneV39.knownToVisiGene.name (via foldUtr5.name)
      knownGeneV39.knownToWikipedia.name (via foldUtr5.name)
      knownGeneV39.mmBlastTab.query (via foldUtr5.name)
      knownGeneV39.rnBlastTab.query (via foldUtr5.name)
      knownGeneV39.scBlastTab.query (via foldUtr5.name)
      knownGeneV39.ucscScop.ucscId (via foldUtr5.name)
      mm9.affyGnfU74ADistance.query (via foldUtr5.name)
      mm9.affyGnfU74ADistance.target (via foldUtr5.name)
      mm9.affyGnfU74BDistance.query (via foldUtr5.name)
      mm9.affyGnfU74BDistance.target (via foldUtr5.name)
      mm9.affyGnfU74CDistance.query (via foldUtr5.name)
      mm9.affyGnfU74CDistance.target (via foldUtr5.name)
      mm9.bioCycPathway.kgID (via foldUtr5.name)
      mm9.ccdsKgMap.geneId (via foldUtr5.name)
      mm9.ceBlastTab.query (via foldUtr5.name)
      mm9.dmBlastTab.query (via foldUtr5.name)
      mm9.drBlastTab.query (via foldUtr5.name)
      mm9.foldUtr3.name (via foldUtr5.name)
      mm9.gnfAtlas2Distance.query (via foldUtr5.name)
      mm9.gnfAtlas2Distance.target (via foldUtr5.name)
      mm9.hgBlastTab.query (via foldUtr5.name)
      mm9.keggPathway.kgID (via foldUtr5.name)
      mm9.kgAlias.kgID (via foldUtr5.name)
      mm9.kgColor.kgID (via foldUtr5.name)
      mm9.kgProtAlias.kgID (via foldUtr5.name)
      mm9.kgProtMap2.qName (via foldUtr5.name)
      mm9.kgSpAlias.kgID (via foldUtr5.name)
      mm9.kgTargetAli.qName (via foldUtr5.name)
      mm9.kgTxInfo.name (via foldUtr5.name)
      mm9.kgXref.kgID (via foldUtr5.name)
      mm9.knownBlastTab.query (via foldUtr5.name)
      mm9.knownBlastTab.target (via foldUtr5.name)
      mm9.knownCanonical.protein (via foldUtr5.name)
      mm9.knownCanonical.transcript (via foldUtr5.name)
      mm9.knownGene.name (via foldUtr5.name)
      mm9.knownGeneMrna.name (via foldUtr5.name)
      mm9.knownGenePep.name (via foldUtr5.name)
      mm9.knownIsoforms.transcript (via foldUtr5.name)
      mm9.knownToAllenBrain.name (via foldUtr5.name)
      mm9.knownToEnsembl.name (via foldUtr5.name)
      mm9.knownToGnfAtlas2.name (via foldUtr5.name)
      mm9.knownToKeggEntrez.name (via foldUtr5.name)
      mm9.knownToLocusLink.name (via foldUtr5.name)
      mm9.knownToPfam.name (via foldUtr5.name)
      mm9.knownToRefSeq.name (via foldUtr5.name)
      mm9.knownToSuper.gene (via foldUtr5.name)
      mm9.knownToVisiGene.name (via foldUtr5.name)
      mm9.rnBlastTab.query (via foldUtr5.name)
      mm9.scBlastTab.query (via foldUtr5.name)
      mm9.ucscScop.ucscId (via foldUtr5.name)

Sample Rows
 
nameseqfoldenergy
uc007aeu.1GCGGCGGCGGGCGAGCGGGCGCUGGAGUAGGAGCUGGGGAGCGGCGCGGCCGGGGAAGGAAGCCAGGGCGAGGCGAGGAGGUGGCGGGAGGAGGAGACAGCAGGGACAGGUGUCAGAUAAAGGAGUGC ....(((((((((.(.(((....))).)..........((((((((.(((.(((..........((....))..........))).))).........((((.(.......).))))...........))) ...-55.75
uc007aew.1AAGCUCAGCCUUUGCUCAGAUUCUCCUCUUGAUGAAACAAAGGGAUUUCUGCAC.(((.........)))((((...(((..(((......)))..)))..))))...-10.1
uc007aex.2AAUAAAUCCAAAGACAUUUGUUUACGUGAAACAAGCAGGUUGCAUAUCCAGUGACGUUUAUACAGACCACACAAACUAUUUACUCUUUUCUUCGUAAGGAAAGGUUCAACUUCUGGUCUCACCCAAA...........((((....))))..((((.((.((.((((((........(((..((((....))))..)))...........((((((((.....))))))))..)))))))).)).)))).....-20.5
uc007aey.1GGGGCGGGUGUGGGACUUGGGACUCGGACCACUGGCUGGGCGGGGGCCUAAGGACUAGGGUCCGGUCCGCCCCCGCCUCGCCAUUGGCCGCGUCCAUAAAGAAAAGGGCCCCGCGGCCCGGGGGGACA ......(((((.((....(((.((((.(((.(((.((((.((((((((((....((((....)))).....)))))))))).)))).)))))).))))...)))......))))))).((((((((((((. ...-178
uc007aez.1CCCAUUUAGUGAAGAAACUGAAAUAUGGCCCACUCACACUGCUGGCGGGUCUGAAGUGCGGUUGGCCCCAACACUCCUCCCAAAGUAUCUAUCAAGAGAAUGGUCAGCAGAAGUUAGAUCUAGUUUUU ....((.((((((......))))))....((((..(((.......((((((((((..(((((.((((....))))..((.((((.............(((((..(((((((....))).))))...))))) ...-301.73
uc007afa.1CCCAUUUAGUGAAGAAACUGAAAUAUGGCCCACUCACACUGCUGGCGGGUCUGAAGUGCGGUUGGCCCCAACACUCCUCCCAAAGUAUCUAUCAAGAGAAUGGUCAGCAGAAGUUAGAUCUAGUUUUU ....(((((((((......)))))...))))............(((((.((.((((....(((((((((((......((((((((..(((((((....(((((((((.(((..............(((((. ...-229.67
uc007afb.1CCCAUUUAGUGAAGAAACUGAAAUAUGGCCCACUCACACUGCUGGCGGGUCUGAAGUGCGGUUGGCCCCAACACUCCUCCCAAAGUAUCUAUCAAGAGAAUGGUCAGCAGAAGUUAGAUCUAGUGAGC ....(((((((((......)))))...))))....(((...(((((.((((((((((....(.(((((((.....(((........))).(((......)))..))))))).)...)))))))).)).))) ...-95.6
uc007afc.1CCCAUUUAGUGAAGAAACUGAAAUAUGGCCCACUCACACUGCUGGCGGGUCUGAAGUGCGGUUGGCCCCAACACUCCUCCCAAAGUAUCUAUCAAGAGAAUGGUCAGCAGAAGUUAGAUCUAGUGAGC .......((((((......))))))....(((.........(((((.((((((((((....(.(((((((.....(((........))).(((......)))..))))))).)...)))))))).)).))) ...-104
uc007afd.2AACGCGGAGUCUACGCCGCUUCCUGGGCGCCCUUGAAGCACCGCGGGUC..(((((.(....)...(((((..((....))..))))).)))))....-18.7
uc007aff.2AACGCGGAGUCUACGCCGCUUCCUGGGCGCCCUUGAAGCACCGCGGGUC..(((((.(....)...(((((..((....))..))))).)))))....-18.7

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.