Schema for dmBlastTab
  Database: mm9    Primary Table: dmBlastTab    Row Count: 5,923   Data last updated: 2011-04-19
Format description: Blast alignments of Drosophila genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query uc008pgu.2varchar(255) values Name of sequence in this assembly (query)
target CG6775-RBvarchar(255) values Name of sequence in other assembly (target)
identity 60.13float range Percent identity
aliLength 1111int(10) unsigned range Length of alignment
mismatch 398int(10) unsigned range Number of mismatches
gapOpen 14int(10) unsigned range Number of gap openings
qStart 1855int(10) unsigned range Start in query (0 based)
qEnd 2936int(10) unsigned range End in query (non-inclusive)
tStart 2426int(10) unsigned range Start in target (0 based)
tEnd 3522int(10) unsigned range End in target (non-inclusive)
eValue 0double range Expectation value
bitScore 1319double range Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via dmBlastTab.query)
      knownGeneV39.ceBlastTab.query (via dmBlastTab.query)
      knownGeneV39.dmBlastTab.query (via dmBlastTab.query)
      knownGeneV39.drBlastTab.query (via dmBlastTab.query)
      knownGeneV39.foldUtr3.name (via dmBlastTab.query)
      knownGeneV39.foldUtr5.name (via dmBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via dmBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via dmBlastTab.query)
      knownGeneV39.kgAlias.kgID (via dmBlastTab.query)
      knownGeneV39.kgColor.kgID (via dmBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via dmBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via dmBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via dmBlastTab.query)
      knownGeneV39.kgXref.kgID (via dmBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via dmBlastTab.query)
      knownGeneV39.knownBlastTab.query (via dmBlastTab.query)
      knownGeneV39.knownBlastTab.target (via dmBlastTab.query)
      knownGeneV39.knownCanonical.protein (via dmBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via dmBlastTab.query)
      knownGeneV39.knownCds.name (via dmBlastTab.query)
      knownGeneV39.knownGene.name (via dmBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via dmBlastTab.query)
      knownGeneV39.knownGenePep.name (via dmBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via dmBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via dmBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via dmBlastTab.query)
      knownGeneV39.knownToHprd.name (via dmBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via dmBlastTab.query)
      knownGeneV39.knownToMrna.name (via dmBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via dmBlastTab.query)
      knownGeneV39.knownToMupit.name (via dmBlastTab.query)
      knownGeneV39.knownToPfam.name (via dmBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via dmBlastTab.query)
      knownGeneV39.knownToSuper.gene (via dmBlastTab.query)
      knownGeneV39.knownToTag.name (via dmBlastTab.query)
      knownGeneV39.knownToU133.name (via dmBlastTab.query)
      knownGeneV39.knownToU95.name (via dmBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via dmBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via dmBlastTab.query)
      knownGeneV39.mmBlastTab.query (via dmBlastTab.query)
      knownGeneV39.rnBlastTab.query (via dmBlastTab.query)
      knownGeneV39.scBlastTab.query (via dmBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via dmBlastTab.query)
      mm9.affyGnfU74ADistance.query (via dmBlastTab.query)
      mm9.affyGnfU74ADistance.target (via dmBlastTab.query)
      mm9.affyGnfU74BDistance.query (via dmBlastTab.query)
      mm9.affyGnfU74BDistance.target (via dmBlastTab.query)
      mm9.affyGnfU74CDistance.query (via dmBlastTab.query)
      mm9.affyGnfU74CDistance.target (via dmBlastTab.query)
      mm9.bioCycPathway.kgID (via dmBlastTab.query)
      mm9.ccdsKgMap.geneId (via dmBlastTab.query)
      mm9.ceBlastTab.query (via dmBlastTab.query)
      mm9.drBlastTab.query (via dmBlastTab.query)
      mm9.foldUtr3.name (via dmBlastTab.query)
      mm9.foldUtr5.name (via dmBlastTab.query)
      mm9.gnfAtlas2Distance.query (via dmBlastTab.query)
      mm9.gnfAtlas2Distance.target (via dmBlastTab.query)
      mm9.hgBlastTab.query (via dmBlastTab.query)
      mm9.keggPathway.kgID (via dmBlastTab.query)
      mm9.kgAlias.kgID (via dmBlastTab.query)
      mm9.kgColor.kgID (via dmBlastTab.query)
      mm9.kgProtAlias.kgID (via dmBlastTab.query)
      mm9.kgProtMap2.qName (via dmBlastTab.query)
      mm9.kgSpAlias.kgID (via dmBlastTab.query)
      mm9.kgTargetAli.qName (via dmBlastTab.query)
      mm9.kgTxInfo.name (via dmBlastTab.query)
      mm9.kgXref.kgID (via dmBlastTab.query)
      mm9.knownBlastTab.query (via dmBlastTab.query)
      mm9.knownBlastTab.target (via dmBlastTab.query)
      mm9.knownCanonical.protein (via dmBlastTab.query)
      mm9.knownCanonical.transcript (via dmBlastTab.query)
      mm9.knownGene.name (via dmBlastTab.query)
      mm9.knownGeneMrna.name (via dmBlastTab.query)
      mm9.knownGenePep.name (via dmBlastTab.query)
      mm9.knownIsoforms.transcript (via dmBlastTab.query)
      mm9.knownToAllenBrain.name (via dmBlastTab.query)
      mm9.knownToEnsembl.name (via dmBlastTab.query)
      mm9.knownToGnfAtlas2.name (via dmBlastTab.query)
      mm9.knownToKeggEntrez.name (via dmBlastTab.query)
      mm9.knownToLocusLink.name (via dmBlastTab.query)
      mm9.knownToPfam.name (via dmBlastTab.query)
      mm9.knownToRefSeq.name (via dmBlastTab.query)
      mm9.knownToSuper.gene (via dmBlastTab.query)
      mm9.knownToVisiGene.name (via dmBlastTab.query)
      mm9.rnBlastTab.query (via dmBlastTab.query)
      mm9.scBlastTab.query (via dmBlastTab.query)
      mm9.ucscScop.ucscId (via dmBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
uc008pgu.2CG6775-RB60.13111139814185529362426352201319
uc009eyt.1CG8188-RB56200681220251853e-60228
uc008nys.2CG13281-RA51.589834548097009740919
uc008phj.2CG10277-RD40.0728215181328562804e-40162
uc007yhj.1CG6214-RJ50.1915507161815152817154801434
uc009eys.1CG12740-RD45.59136721113531391.0000000000000001e-23104
uc008nyr.2CG7578-RA59.56180553623317755164901979
uc007ygr.1CG12355-RB32.12165103113169131781.0000000000000001e-23106
uc008nzi.1CG1066-RC69.49472137594762847540634
uc009ghh.2CG17592-RB31.511466222313442503910.0000000000000375.9

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.